Whats the /etc/my.cnf look like? Keep in mind that my.cnf does NOT get installed with mysql... so if you set something via mysql command line and restart the service or the box you will lose the setting.
Inside my.cnf... (among other things):
You could change the value of:
long_query_time=6 and slow queries will be greater than 6 seconds.
Also you can set the location:
log_slow_queries=/var/lib/mysql/slow-queries.log
Also when you do a "mysqladmin", it will tell you what places it is reading the my.cnf from by default.
What version of mysql are we running? 5.0.something ?? 5.0.26 is current.
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-Justin
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